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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
94
single cell RNA-seq
72
total RNA-seq
59
DNase-seq
48
ATAC-seq
9
Hi-C
9
WGBS
5
RRBS
4
pCHi-C
2
small RNA-seq
1
snATAC-seq
Assay category
168
Transcription
158
DNA binding
108
DNA accessibility
14
DNA methylation
9
3D chromatin structure
Target of assay
120
histone
120
histone modification
73
broad histone mark
47
narrow histone mark
22
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
59
June, 2019
57
April, 2019
40
May, 2024
36
February, 2023
28
May, 2019
27
July, 2019
26
August, 2017
12
March, 2020
8
October, 2019
4
February, 2020
3
May, 2021
2
May, 2022
1
January, 2018
Available data
271
bigWig
243
bam
236
bed narrowPeak
170
tsv
126
bigBed narrowPeak
72
bed broadPeak
60
bed bed3+
59
bigBed broadPeak
21
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
5
bedpe bed3+
5
hic
2
fastq
1
txt
Organism
461
Homo sapiens
Biosample type
394
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
461
AMP
Genome assembly (visualization)
298
GRCh38
239
hg19
Lab
421
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
esophagus
biosample_type!
primary cell
BIOSAMPLE
ASSAY
461 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
RRBS
pCHi-C
small RNA-seq
snATAC-seq
tissue
heart left ventricle
35
18
3
3
2
1
4
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
2
36
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
1
2
1
+ See 17 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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