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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
34
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
ATAC-seq
3
WGBS
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
60
DNA binding
38
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
40
histone
40
histone modification
24
broad histone mark
16
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
26
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
2
October, 2019
1
January, 2018
1
October, 2017
Available data
85
bigWig
82
bam
75
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
26
fastq
16
tagAlign
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
123
Homo sapiens
Biosample type
109
tissue
14
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
Genome assembly (visualization)
88
hg19
70
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
esophagus
BIOSAMPLE
ASSAY
123 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
spleen
20
1
1
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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