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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
35
DNase-seq
8
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
41
DNA binding
38
DNA accessibility
9
Transcription
8
3D chromatin structure
6
DNA methylation
Target of assay
35
histone
35
histone modification
21
broad histone mark
14
narrow histone mark
6
control
Date released
43
June, 2019
21
October, 2019
11
August, 2017
10
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
83
bigWig
77
bam
73
bed narrowPeak
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
103
Homo sapiens
Biosample type
67
tissue
36
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
77
hg19
65
GRCh38
Lab
103
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
organ_slims!
esophagus
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
7
13
1
muscle of arm
17
skeletal muscle tissue
7
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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