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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
8
ChIP-seq
8
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
38
DNA accessibility
9
Transcription
8
3D chromatin structure
8
DNA binding
6
DNA methylation
Target of assay
48
histone
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
35
June, 2019
10
July, 2019
7
August, 2017
6
March, 2020
6
October, 2019
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
48
bam
44
bigWig
36
bed bed3+
36
bed narrowPeak
36
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
2
tagAlign
1
tar
1
txt
Organism
70
Homo sapiens
Biosample type
57
tissue
13
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
51
hg19
42
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
2
audit script error
2
inconsistent ontology term
organ_slims!
esophagus
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
endothelial cell of umbilical vein
2
2
2
1
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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