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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
6
total RNA-seq
5
RRBS
4
ChIP-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
9
Transcription
6
3D chromatin structure
6
DNA methylation
4
DNA binding
2
DNA accessibility
Target of assay
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
10
July, 2019
7
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
9
tsv
8
bam
8
bigWig
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
bed bed3+
1
txt
Organism
28
Homo sapiens
Biosample type
25
tissue
3
primary cell
Organ
791
pancreas
687
liver
596
connective tissue
458
adipose tissue
413
epithelium
263
heart
244
kidney
159
bone element
158
vasculature
155
blood vessel
119
artery
69
brain
68
blood
68
bodily fluid
52
eye
41
limb
28
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
gonad
target.investigated_as!
histone
month_released!
June, 2019
BIOSAMPLE
ASSAY
28 results
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Hi-C
total RNA-seq
RRBS
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
1
4
3
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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