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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
6
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
17
DNA binding
7
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bam
55
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
7
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
68
Homo sapiens
Biosample type
54
tissue
14
primary cell
Organ
757
pancreas
liver
557
connective tissue
495
epithelium
432
adipose tissue
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
69
blood
69
bodily fluid
68
musculature of body
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
58
hg19
53
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
liver
month_released!
August, 2017
February, 2020
BIOSAMPLE
ASSAY
68 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
gastrocnemius medialis
4
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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