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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
11
snATAC-seq
6
Hi-C
5
RRBS
2
pCHi-C
1
ATAC-seq
1
WGBS
Assay category
45
DNA accessibility
39
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
April, 2020
7
May, 2019
6
July, 2019
4
March, 2020
1
January, 2018
1
May, 2022
Available data
62
bigWig
60
bed narrowPeak
51
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tsv
1
txt
Organism
97
Homo sapiens
Biosample type
86
tissue
12
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
88
AMP
10
LungMap
Genome assembly (visualization)
67
hg19
47
GRCh38
Lab
88
AMP-T2D consortium
10
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
ovary
assay_slims!
Transcription
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
RRBS
pCHi-C
ATAC-seq
WGBS
tissue
skeletal muscle tissue
22
1
4
1
muscle of leg
7
13
1
muscle of arm
17
lung
10
1
gastrocnemius medialis
4
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
See all biosamples
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