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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
13
ATAC-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
27
DNA binding
6
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
15
August, 2017
8
February, 2021
6
May, 2019
5
July, 2019
4
February, 2023
4
March, 2020
1
January, 2018
1
May, 2022
Available data
68
bed narrowPeak
67
bigWig
61
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
6
tsv
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
73
tissue
12
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
85
AMP
Genome assembly (visualization)
85
hg19
61
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
organ_slims!
ovary
BIOSAMPLE
ASSAY
85 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
snATAC-seq
tissue
muscle of leg
13
6
skeletal muscle tissue
13
1
1
2
1
1
muscle of arm
17
psoas muscle
2
2
acetabular part of hip bone
1
+ See 13 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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