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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
10
total RNA-seq
9
ATAC-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
13
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
69
October, 2019
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
6
February, 2021
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
129
bam
118
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
12
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
168
Homo sapiens
Biosample type
154
tissue
14
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
168
AMP
Genome assembly (visualization)
127
hg19
109
GRCh38
Lab
168
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
ovary
month_released!
March, 2020
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
RRBS
Hi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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