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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
22
ChIP-seq
11
Hi-C
7
single cell RNA-seq
5
RRBS
5
total RNA-seq
2
pCHi-C
1
snATAC-seq
Assay category
37
DNA accessibility
22
DNA binding
12
Transcription
11
3D chromatin structure
5
DNA methylation
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
35
February, 2023
26
August, 2017
7
July, 2019
6
August, 2021
6
March, 2020
5
February, 2020
2
May, 2022
1
January, 2018
1
October, 2019
Available data
bam
218
bigWig
189
bed narrowPeak
126
bigBed narrowPeak
77
tsv
59
bed broadPeak
46
bigBed broadPeak
45
bed bed3+
21
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
fastq
5
hic
4
bedpe bed3+
2
hdf5
1
tar
1
txt
Organism
89
Homo sapiens
Biosample type
84
tissue
5
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
35
GRCh38
25
hg19
Lab
89
AMP-T2D consortium
Audit category:
2
audit script error
organ_slims!
pericardium
files.file_type!
bam
BIOSAMPLE
ASSAY
89 results
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ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
RRBS
total RNA-seq
pCHi-C
snATAC-seq
tissue
coronary artery
35
1
skeletal muscle tissue
1
22
1
4
1
aorta
1
4
1
gastrocnemius medialis
4
1
psoas muscle
2
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
skeletal muscle cell
1
See all biosamples
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