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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
39
DNase-seq
24
ATAC-seq
10
Hi-C
7
RRBS
6
WGBS
5
small RNA-seq
4
pCHi-C
2
STARR-seq
2
single cell RNA-seq
1
snATAC-seq
1
whole genome sequencing assay
Assay category
DNA binding
202
Transcription
64
DNA accessibility
13
DNA methylation
10
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
42
May, 2022
35
June, 2019
20
July, 2019
13
August, 2021
10
August, 2017
8
March, 2020
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2020
3
February, 2021
2
October, 2019
1
December, 2018
1
January, 2018
Available data
231
bigWig
211
bam
183
tsv
61
bed narrowPeak
41
bed bed3+
39
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
15
fastq
7
bed bedMethyl
7
bigBed bedMethyl
4
bedpe bed3+
4
hic
1
bed bed3
1
csv
1
hdf5
1
txt
1
vcf
Organism
296
Homo sapiens
Biosample type
259
tissue
23
cell line
14
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
296
AMP
Genome assembly (visualization)
242
hg19
211
GRCh38
Lab
243
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent replicate
organ_slims!
thymus
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
296 results
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total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
pCHi-C
STARR-seq
single cell RNA-seq
snATAC-seq
whole genome sequencing assay
tissue
liver
167
2
20
1
1
3
1
1
1
muscle of arm
17
muscle of leg
13
1
right lobe of liver
3
2
1
1
2
skeletal muscle tissue
1
1
4
1
1
1
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cell line
HepG2
14
1
2
1
2
2
1
primary cell
hepatocyte
5
1
1
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
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