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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
35
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
5
RRBS
5
small RNA-seq
3
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
DNA binding
43
DNA accessibility
12
DNA methylation
6
3D chromatin structure
Date released
386
February, 2021
34
June, 2019
22
July, 2019
11
August, 2017
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
447
bigWig
445
bam
410
tsv
39
bed narrowPeak
37
bigBed narrowPeak
36
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
474
Homo sapiens
Biosample type
468
tissue
6
primary cell
1
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
475
AMP
Genome assembly (visualization)
453
hg19
446
GRCh38
Lab
475
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
475 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
3
3
1
muscle of arm
17
muscle of leg
13
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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