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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
54
ChIP-seq
5
small RNA-seq
3
WGBS
Assay category
404
Transcription
54
DNA binding
DNA accessibility
3
DNA methylation
Target of assay
22
control
17
transcription factor
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
23
October, 2018
17
July, 2019
16
August, 2017
10
June, 2019
7
May, 2019
2
March, 2020
Available data
461
bam
453
bigWig
410
tsv
43
fastq
34
bed narrowPeak
23
tagAlign
20
bigBed narrowPeak
14
bed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bed3+
3
bedpe bed3+
2
hic
Organism
461
Homo sapiens
Biosample type
447
tissue
14
primary cell
Organ
673
liver
614
pancreas
579
connective tissue
437
adipose tissue
275
epithelium
208
brain
169
heart
162
vasculature
159
blood vessel
88
artery
70
limb
64
kidney
60
blood
60
bodily fluid
58
bone element
39
nerve
36
embryo
24
musculature of body
22
spleen
17
vein
3
eye
1
pericardium
1
pituitary gland
Project
461
AMP
Genome assembly (visualization)
438
GRCh38
436
hg19
Lab
461
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
461 results
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total RNA-seq
ChIP-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
12
1
omental fat pad
4
11
1
white adipose tissue
12
muscle of leg
7
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
1
8
1
mesenchymal stem cell of adipose
1
1
skeletal muscle cell
2
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