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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
7
ATAC-seq
7
WGBS
6
Hi-C
5
RRBS
5
small RNA-seq
3
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
DNA binding
12
DNA methylation
8
DNA accessibility
6
3D chromatin structure
Date released
386
February, 2021
22
July, 2019
11
August, 2017
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
447
bigWig
445
bam
410
tsv
39
bed narrowPeak
37
bigBed narrowPeak
36
bed bed3+
35
bed broadPeak
bigBed broadPeak
9
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
439
Homo sapiens
Biosample type
434
tissue
5
primary cell
1
in vitro differentiated cells
Organ
721
pancreas
522
connective tissue
416
adipose tissue
379
epithelium
234
liver
229
heart
224
kidney
159
bone element
123
vasculature
122
blood vessel
103
artery
52
eye
36
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
440
AMP
Genome assembly (visualization)
418
hg19
411
GRCh38
Lab
440
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
3
3
1
subcutaneous adipose tissue
7
1
1
1
skeletal muscle tissue
1
1
4
1
1
1
omental fat pad
5
1
1
gastrocnemius medialis
1
4
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primary cell
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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