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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
total RNA-seq
35
DNase-seq
31
ChIP-seq
5
small RNA-seq
3
ATAC-seq
Assay category
405
Transcription
38
DNA accessibility
31
DNA binding
Target of assay
17
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
42
June, 2019
16
July, 2019
14
August, 2017
5
May, 2019
5
October, 2018
2
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
476
bam
475
bigWig
404
tsv
57
bed narrowPeak
55
bigBed narrowPeak
39
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
23
fastq
3
bed bedMethyl
bigBed bedMethyl
Organism
474
Homo sapiens
Biosample type
461
tissue
13
primary cell
Organ
631
pancreas
564
connective tissue
530
liver
422
adipose tissue
294
epithelium
260
heart
217
brain
205
kidney
190
vasculature
186
blood vessel
128
artery
95
limb
66
bone element
54
blood
54
bodily fluid
52
musculature of body
31
nerve
29
embryo
18
ureter
14
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
474
AMP
Genome assembly (visualization)
496
hg19
474
GRCh38
Lab
474
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
474 results
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total RNA-seq
DNase-seq
ChIP-seq
small RNA-seq
ATAC-seq
tissue
adipose tissue
382
1
muscle of leg
13
5
muscle of arm
17
white adipose tissue
12
omental fat pad
4
2
3
1
1
+ See 7 more…
primary cell
skeletal muscle satellite cell
1
7
1
mesenchymal stem cell of adipose
1
1
skeletal muscle cell
1
1
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