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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
20
ChIP-seq
1
ATAC-seq
Assay category
36
DNA accessibility
20
DNA binding
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
42
June, 2019
6
May, 2019
5
October, 2018
2
August, 2017
1
November, 2018
October, 2019
Available data
499
bam
492
bigWig
410
tsv
73
bed narrowPeak
56
bigBed narrowPeak
49
bed broadPeak
46
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
56
Homo sapiens
Biosample type
47
tissue
9
primary cell
Organ
358
liver
127
brain
103
kidney
94
heart
84
pancreas
62
epithelium
54
blood
54
bodily fluid
50
vasculature
47
musculature of body
46
blood vessel
38
limb
25
connective tissue
18
ureter
13
spleen
9
adipose tissue
6
eye
5
artery
Project
56
AMP
Genome assembly (visualization)
56
hg19
55
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
56 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
muscle of leg
13
6
muscle of arm
17
omental fat pad
2
3
subcutaneous adipose tissue
2
1
adipose tissue
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
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