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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
54
ChIP-seq
35
DNase-seq
5
small RNA-seq
3
ATAC-seq
3
WGBS
Assay category
404
Transcription
54
DNA binding
38
DNA accessibility
3
DNA methylation
Target of assay
22
control
17
transcription factor
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
44
June, 2019
23
October, 2018
17
August, 2017
17
July, 2019
7
May, 2019
2
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
499
bam
493
bigWig
410
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
46
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
499
Homo sapiens
Biosample type
484
tissue
15
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
499
AMP
Genome assembly (visualization)
476
GRCh38
474
hg19
Lab
499
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
lymph node
BIOSAMPLE
ASSAY
499 results
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total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
tissue
adipose tissue
381
2
2
muscle of leg
7
13
1
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
2
1
1
muscle of arm
17
+ See 7 more…
primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
mesenchymal stem cell of adipose
1
1
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