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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
total RNA-seq
46
ChIP-seq
35
DNase-seq
7
ATAC-seq
5
small RNA-seq
3
RRBS
2
Hi-C
1
snATAC-seq
Assay category
405
Transcription
46
DNA binding
43
DNA accessibility
3
DNA methylation
2
3D chromatin structure
Target of assay
29
histone
29
histone modification
17
transcription factor
16
broad histone mark
13
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
42
June, 2019
30
August, 2017
17
July, 2019
6
May, 2019
5
October, 2018
4
March, 2020
2
January, 2018
1
February, 2023
1
May, 2022
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
490
bigWig
474
bam
404
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
40
bed bed3+
35
bigBed broadPeak
23
fastq
14
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
499
Homo sapiens
Biosample type
485
tissue
14
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
499
AMP
Genome assembly (visualization)
499
hg19
477
GRCh38
Lab
499
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
organ_slims!
ovary
BIOSAMPLE
ASSAY
499 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
RRBS
Hi-C
snATAC-seq
tissue
adipose tissue
382
1
3
muscle of leg
6
13
skeletal muscle tissue
1
13
1
1
2
1
muscle of arm
17
white adipose tissue
12
+ See 8 more…
primary cell
skeletal muscle satellite cell
1
7
1
skeletal muscle cell
1
1
1
mesenchymal stem cell of adipose
1
1
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