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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
6
Hi-C
5
RRBS
5
total RNA-seq
4
ATAC-seq
4
WGBS
4
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
58
DNA binding
9
DNA methylation
6
3D chromatin structure
6
Transcription
5
DNA accessibility
Target of assay
50
histone
50
histone modification
32
broad histone mark
18
narrow histone mark
8
control
Date released
66
August, 2017
5
July, 2019
5
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
October, 2019
Available data
bam
509
bigWig
411
tsv
87
bed narrowPeak
70
bigBed narrowPeak
70
fastq
50
bed broadPeak
41
bed bed3+
36
bigBed broadPeak
23
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
88
Homo sapiens
Biosample type
87
tissue
1
in vitro differentiated cells
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
25
hg19
1
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
WGBS
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
1
1
1
adipose tissue
1
3
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
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in vitro differentiated cells
white fat cell
1
primary cell
skeletal muscle cell
1
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