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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
132
ChIP-seq
36
DNase-seq
9
WGBS
8
ATAC-seq
6
Hi-C
5
RRBS
5
small RNA-seq
4
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
132
DNA binding
45
DNA accessibility
14
DNA methylation
6
3D chromatin structure
Target of assay
71
histone
71
histone modification
44
broad histone mark
38
control
27
narrow histone mark
23
transcription factor
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
83
August, 2017
44
June, 2019
23
October, 2018
22
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
7
March, 2020
7
May, 2019
4
February, 2020
2
January, 2018
2
May, 2022
2
October, 2017
1
August, 2018
August, 2021
1
February, 2023
1
May, 2023
1
November, 2019
1
October, 2019
Available data
523
bam
509
bigWig
411
tsv
87
bed narrowPeak
70
bigBed narrowPeak
70
fastq
50
bed broadPeak
41
bed bed3+
36
bigBed broadPeak
23
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
611
Homo sapiens
Biosample type
594
tissue
16
primary cell
1
in vitro differentiated cells
Organ
942
pancreas
756
liver
679
connective tissue
518
epithelium
490
adipose tissue
301
heart
286
brain
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
611
AMP
Genome assembly (visualization)
513
hg19
493
GRCh38
Lab
611
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
month_released!
August, 2021
BIOSAMPLE
ASSAY
611 results
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total RNA-seq
ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
4
1
1
1
spleen
20
1
2
1
1
muscle of leg
7
13
1
+ See 11 more…
primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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