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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
46
ATAC-seq
37
DNase-seq
6
Hi-C
5
RRBS
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
84
DNA accessibility
73
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
15
control
5
transcription factor
1
RNA binding protein
Date released
45
June, 2019
35
February, 2023
26
August, 2017
26
October, 2019
14
February, 2021
12
May, 2019
7
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
134
bed narrowPeak
99
bam
93
bigWig
72
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
21
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
170
Homo sapiens
Biosample type
144
tissue
14
cell line
12
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
170
AMP
Genome assembly (visualization)
121
GRCh38
106
hg19
Lab
170
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
WGBS
pCHi-C
snATAC-seq
tissue
coronary artery
5
36
2
skeletal muscle tissue
22
1
4
1
tibial artery
23
1
2
muscle of leg
7
13
1
muscle of arm
17
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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