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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
61
total RNA-seq
46
ATAC-seq
37
DNase-seq
6
Hi-C
5
RRBS
3
single cell RNA-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
84
DNA accessibility
73
DNA binding
66
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
15
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
45
June, 2019
35
February, 2023
26
August, 2017
26
October, 2019
12
July, 2019
12
May, 2019
5
March, 2020
4
February, 2020
2
August, 2021
2
May, 2022
1
January, 2018
Available data
158
bam
152
bigWig
134
bed narrowPeak
72
bigBed narrowPeak
66
tsv
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
21
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
236
Homo sapiens
Biosample type
155
tissue
66
cell line
15
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
236
AMP
Genome assembly (visualization)
180
GRCh38
165
hg19
Lab
236
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
single cell RNA-seq
small RNA-seq
WGBS
pCHi-C
snATAC-seq
tissue
coronary artery
5
1
36
2
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
1
1
2
muscle of leg
7
13
1
muscle of arm
17
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
smooth muscle cell of the coronary artery
1
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