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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
33
DNase-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
67
DNA binding
33
DNA accessibility
6
Transcription
1
DNA methylation
Target of assay
51
transcription factor
14
histone
14
histone modification
10
RNA binding protein
10
chromatin remodeller
8
broad histone mark
6
narrow histone mark
Date released
41
June, 2019
27
December, 2018
15
January, 2019
12
November, 2018
5
July, 2019
5
May, 2019
2
March, 2020
Available data
107
bam
107
bigWig
100
bed narrowPeak
100
bigBed narrowPeak
54
fastq
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
107
Homo sapiens
Biosample type
54
cell line
42
tissue
11
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
226
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
107
AMP
Genome assembly (visualization)
128
hg19
107
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
WGBS
cell line
GM12878
54
tissue
muscle of leg
5
13
1
muscle of arm
17
psoas muscle
2
skeletal muscle tissue
1
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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