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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
84
RNA microarray
68
total RNA-seq
33
DNase-seq
14
ATAC-seq
9
snATAC-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
99
DNA binding
71
Transcription
56
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
150
February, 2021
43
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
10
July, 2019
8
February, 2023
8
January, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
1
May, 2021
Available data
183
bam
181
bigWig
122
bed narrowPeak
101
bigBed narrowPeak
89
txt
67
tsv
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
324
Homo sapiens
Biosample type
240
tissue
61
cell line
23
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
315
AMP
9
T1D
Genome assembly (visualization)
198
hg19
173
GRCh38
Lab
315
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
324 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
snATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
22
1
1
1
4
1
1
muscle of leg
7
13
1
muscle of arm
17
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cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
megakaryocyte
1
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