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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
total RNA-seq
32
DNase-seq
29
ChIP-seq
13
ATAC-seq
6
Hi-C
4
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
69
Transcription
46
DNA accessibility
29
DNA binding
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
150
February, 2021
32
June, 2019
26
August, 2017
8
February, 2023
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
115
bigWig
110
bam
89
txt
65
tsv
59
bed narrowPeak
45
bed broadPeak
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
240
Homo sapiens
Biosample type
240
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
240
AMP
Genome assembly (visualization)
131
hg19
108
GRCh38
Lab
240
AMP-T2D consortium
Audit category:
85
inconsistent ontology term
1
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
240 results
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RNA microarray
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
1
22
1
4
1
1
1
muscle of leg
13
7
1
muscle of arm
17
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