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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
23
total RNA-seq
9
Hi-C
RRBS
6
small RNA-seq
5
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
WGBS
1
snATAC-seq
Assay category
149
DNA binding
33
Transcription
9
3D chromatin structure
6
DNA accessibility
1
DNA methylation
Target of assay
115
histone
115
histone modification
91
narrow histone mark
37
control
24
broad histone mark
Date released
86
October, 2019
28
November, 2017
24
July, 2019
22
August, 2017
14
February, 2020
10
October, 2017
7
March, 2020
4
May, 2019
2
June, 2019
2
May, 2022
1
February, 2023
1
January, 2018
Available data
300
bam
290
bigWig
263
bed narrowPeak
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
21
fastq
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
1
txt
Organism
201
Homo sapiens
Biosample type
188
tissue
13
primary cell
Organ
853
pancreas
655
connective tissue
481
adipose tissue
442
epithelium
431
liver
297
heart
246
kidney
159
bone element
157
brain
152
vasculature
151
blood vessel
116
artery
54
eye
44
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
201
AMP
Genome assembly (visualization)
120
hg19
98
GRCh38
Lab
201
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
assay_title!
RRBS
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
201 results
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ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
+ See 77 more…
primary cell
skeletal muscle satellite cell
1
1
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 3 more…
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