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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
ChIP-seq
63
DNase-seq
23
total RNA-seq
9
Hi-C
6
small RNA-seq
RRBS
4
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
239
DNA binding
69
DNA accessibility
33
Transcription
9
3D chromatin structure
1
DNA methylation
Target of assay
210
histone
210
histone modification
126
narrow histone mark
84
broad histone mark
32
control
Date released
86
October, 2019
82
November, 2017
73
June, 2019
35
May, 2019
25
July, 2019
22
August, 2017
14
February, 2020
7
March, 2020
6
October, 2017
2
May, 2022
1
February, 2023
1
January, 2018
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
fastq
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
1
txt
Organism
354
Homo sapiens
Biosample type
330
tissue
24
primary cell
Organ
582
connective tissue
473
pancreas
447
adipose tissue
391
heart
350
kidney
325
liver
263
brain
261
epithelium
229
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
60
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
354
AMP
Genome assembly (visualization)
255
GRCh38
215
hg19
Lab
354
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
assay_title!
RRBS
files.file_type!
fastq
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
brain
11
12
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 4 more…
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