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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
2
DNase-seq
2
RRBS
1
ATAC-seq
Assay category
18
DNA binding
3
DNA accessibility
2
DNA methylation
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
10
October, 2017
9
November, 2017
2
August, 2017
2
November, 2018
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
23
Homo sapiens
Biosample type
14
tissue
9
primary cell
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
23
AMP
Genome assembly (visualization)
19
hg19
15
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
DNase-seq
RRBS
ATAC-seq
tissue
brain
9
2
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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