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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
total RNA-seq
6
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
Assay category
32
Transcription
Target of assay
3
control
Date released
15
July, 2019
14
February, 2020
5
March, 2020
1
October, 2019
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
35
Homo sapiens
Biosample type
30
tissue
5
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
35 results
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total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
frontal cortex
2
1
psoas muscle
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
+ See 15 more…
primary cell
cerebellar granule cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
See all biosamples
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