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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
65
DNase-seq
1
FAIRE-seq
Assay category
197
DNA binding
66
DNA accessibility
Target of assay
194
histone
194
histone modification
117
narrow histone mark
77
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
71
June, 2019
64
November, 2017
31
May, 2019
13
August, 2017
6
October, 2017
2
November, 2018
1
July, 2019
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
263
Homo sapiens
Biosample type
243
tissue
20
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
263
AMP
Genome assembly (visualization)
247
GRCh38
201
hg19
Lab
263
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
embryo
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
11
14
muscle of leg
6
13
layer of hippocampus
17
muscle of arm
17
angular gyrus
14
+ See 73 more…
primary cell
skeletal muscle satellite cell
7
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
skeletal muscle cell
1
1
+ See 2 more…
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