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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
65
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
RRBS
3
pCHi-C
2
Hi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
257
DNA binding
70
DNA accessibility
18
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
34
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
73
June, 2019
35
May, 2019
July, 2019
26
August, 2017
16
October, 2017
14
February, 2020
7
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
282
bam
269
bigWig
262
bed narrowPeak
173
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
66
bed bed3+
23
fastq
20
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
354
Homo sapiens
Biosample type
329
tissue
25
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
354
AMP
Genome assembly (visualization)
253
GRCh38
215
hg19
Lab
354
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
organ_slims!
embryo
month_released!
July, 2019
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
Hi-C
single cell RNA-seq
snATAC-seq
tissue
brain
20
14
1
1
skeletal muscle tissue
22
1
4
1
1
layer of hippocampus
23
muscle of leg
7
13
caudate nucleus
15
1
1
+ See 83 more…
primary cell
skeletal muscle satellite cell
8
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
skeletal muscle cell
2
1
+ See 2 more…
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