Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
total RNA-seq
6
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
Assay category
37
Transcription
Target of assay
3
control
Date released
15
February, 2020
15
July, 2019
5
March, 2020
4
February, 2023
1
October, 2019
Available data
307
bam
296
bed narrowPeak
296
bigWig
180
bigBed narrowPeak
133
tagAlign
97
bed broadPeak
75
bigBed broadPeak
73
bed bed3+
40
tsv
23
fastq
7
bed bedMethyl
7
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
40
Homo sapiens
Biosample type
35
tissue
5
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
40
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
40 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
frontal cortex
2
1
psoas muscle
2
1
retina
3
Ammon's horn
1
1
cerebellum
2
+ See 17 more…
primary cell
cerebellar granule cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
See all biosamples
Download