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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
ChIP-seq
69
DNase-seq
29
total RNA-seq
12
ATAC-seq
9
Hi-C
7
RRBS
6
small RNA-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
316
DNA binding
83
DNA accessibility
39
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
263
histone
263
histone modification
143
narrow histone mark
120
broad histone mark
53
control
3
RNA binding protein
3
transcription factor
Date released
155
October, 2019
91
November, 2017
73
June, 2019
35
May, 2019
28
July, 2019
26
August, 2017
16
February, 2020
16
October, 2017
7
March, 2020
6
February, 2021
2
May, 2022
2
November, 2018
1
January, 2018
Available data
374
bam
342
bigWig
317
bed narrowPeak
220
bigBed narrowPeak
133
tagAlign
97
bed broadPeak
75
bigBed broadPeak
73
bed bed3+
41
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
bed bed3
1
tagAlign bed3+
1
txt
Organism
458
Homo sapiens
Biosample type
423
tissue
35
primary cell
Organ
946
pancreas
790
liver
678
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
458
AMP
Genome assembly (visualization)
328
GRCh38
294
hg19
Lab
458
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
458 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
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primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
+ See 4 more…
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