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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
37
DNase-seq
29
ATAC-seq
25
total RNA-seq
6
Hi-C
6
RRBS
5
pCHi-C
2
small RNA-seq
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA accessibility
44
DNA binding
28
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
31
February, 2023
26
August, 2017
21
October, 2019
10
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
93
bed narrowPeak
73
bigWig
63
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
156
Homo sapiens
Biosample type
137
tissue
19
primary cell
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
354
kidney
345
heart
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
107
hg19
58
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
WGBS
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
islet of Langerhans
2
1
14
4
retina
3
15
3
muscle of leg
7
13
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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