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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
20
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
WGBS
Assay category
37
DNA accessibility
20
DNA binding
6
Transcription
1
DNA methylation
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
7
May, 2019
5
July, 2019
2
March, 2020
Available data
93
bed narrowPeak
74
bigWig
64
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
14
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
64
Homo sapiens
Biosample type
47
tissue
17
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
64
AMP
Genome assembly (visualization)
59
GRCh38
59
hg19
Lab
64
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
64 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
retina
3
psoas muscle
2
skeletal muscle tissue
1
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
1
3
skeletal muscle cell
1
2
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