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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
total RNA-seq
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
30
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
6
control
Date released
26
August, 2017
5
July, 2019
4
March, 2020
4
October, 2019
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
48
Homo sapiens
Biosample type
45
tissue
3
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
73
hg19
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
islet of Langerhans
4
psoas muscle
2
1
muscle of leg
2
+ See 2 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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