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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
94
single cell RNA-seq
59
DNase-seq
40
ATAC-seq
19
total RNA-seq
9
Hi-C
9
WGBS
5
RRBS
4
pCHi-C
2
small RNA-seq
1
snATAC-seq
Assay category
115
Transcription
112
DNA binding
100
DNA accessibility
14
DNA methylation
9
3D chromatin structure
Target of assay
85
histone
85
histone modification
53
broad histone mark
32
narrow histone mark
20
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
59
June, 2019
57
April, 2019
36
February, 2023
28
May, 2019
27
July, 2019
26
August, 2017
12
March, 2020
8
October, 2019
4
February, 2020
2
May, 2021
2
May, 2022
1
January, 2018
Available data
184
bed narrowPeak
176
bam
174
bigWig
126
bigBed narrowPeak
117
tsv
72
bed broadPeak
60
bed bed3+
59
bigBed broadPeak
15
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
5
bedpe bed3+
5
hic
2
fastq
1
txt
Organism
354
Homo sapiens
Biosample type
354
tissue
66
cell line
27
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
354
AMP
Genome assembly (visualization)
193
GRCh38
174
hg19
Lab
354
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
RRBS
pCHi-C
small RNA-seq
snATAC-seq
tissue
heart left ventricle
35
18
3
2
3
1
4
1
1
coronary artery
5
2
36
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
1
2
1
skeletal muscle tissue
22
1
1
1
4
1
1
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