Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
47
DNA accessibility
15
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
10
October, 2019
6
February, 2021
5
March, 2020
4
August, 2017
4
February, 2020
2
May, 2022
1
January, 2018
Available data
56
bam
51
bigWig
45
bed narrowPeak
38
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
37
bigBed narrowPeak
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
75
Homo sapiens
Biosample type
71
tissue
4
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
62
hg19
56
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
75 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
1
4
1
1
1
tibial nerve
2
5
1
gastrocnemius medialis
1
4
+ See 11 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
See all biosamples
Download