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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
4
DNase-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
88
DNA binding
15
Transcription
14
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
68
histone
68
histone modification
46
broad histone mark
22
narrow histone mark
20
control
Date released
69
October, 2019
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
88
bam
79
bigWig
73
bed narrowPeak
52
bigBed narrowPeak
17
bed broadPeak
15
tagAlign
15
tsv
5
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
4
bigBed broadPeak
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
130
Homo sapiens
Biosample type
127
tissue
3
primary cell
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
318
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
90
hg19
70
GRCh38
Lab
130
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
June, 2019
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
DNase-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
5
1
2
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
1
1
2
muscle of leg
7
1
gastrocnemius medialis
1
4
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primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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