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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
41
DNase-seq
37
ATAC-seq
31
total RNA-seq
6
Hi-C
6
RRBS
5
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
103
DNA binding
79
DNA accessibility
34
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
79
histone
79
histone modification
50
broad histone mark
29
narrow histone mark
23
control
1
RNA binding protein
1
transcription factor
Date released
90
October, 2019
50
June, 2019
31
February, 2023
26
August, 2017
11
July, 2019
7
May, 2019
6
February, 2021
5
February, 2020
5
March, 2020
2
May, 2022
1
January, 2018
Available data
147
bed narrowPeak
138
bam
126
bigWig
99
bigBed narrowPeak
54
bed broadPeak
42
bed bed3+
41
bigBed broadPeak
20
tsv
15
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
234
Homo sapiens
Biosample type
215
tissue
19
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
Genome assembly (visualization)
165
hg19
117
GRCh38
Lab
234
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
1
5
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
+ See 14 more…
primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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