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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
11
snATAC-seq
10
single cell RNA-seq
6
Hi-C
6
total RNA-seq
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
45
DNA accessibility
39
DNA binding
18
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
19
April, 2020
9
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
110
Homo sapiens
Biosample type
98
tissue
13
primary cell
Organ
944
pancreas
789
liver
683
connective tissue
518
epithelium
491
adipose tissue
351
heart
350
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
19
LungMap
Genome assembly (visualization)
70
hg19
53
GRCh38
Lab
92
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
RRBS
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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