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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
1
RRBS
1
pCHi-C
1
small RNA-seq
1
total RNA-seq
Assay category
10
DNA binding
2
Transcription
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
2
control
Date released
10
June, 2019
3
July, 2019
1
March, 2020
Available data
13
bam
11
bigWig
9
bed narrowPeak
9
bigBed narrowPeak
3
tsv
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
14
Homo sapiens
Biosample type
tissue
13
primary cell
1
cell line
Organ
488
epithelium
439
pancreas
423
liver
116
connective tissue
95
vasculature
91
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
34
embryo
20
vein
13
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
14
AMP
Genome assembly (visualization)
11
hg19
10
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
RRBS
pCHi-C
small RNA-seq
total RNA-seq
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
cell line
MCF-7
1
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