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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
47
ChIP-seq
9
Hi-C
8
RRBS
4
pCHi-C
4
total RNA-seq
2
WGBS
1
ATAC-seq
1
snATAC-seq
Assay category
98
Transcription
47
DNA binding
10
DNA methylation
9
3D chromatin structure
2
DNA accessibility
Target of assay
26
control
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
Date released
92
August, 2021
26
August, 2017
11
April, 2019
10
July, 2019
8
March, 2020
8
May, 2019
4
February, 2020
4
June, 2019
2
February, 2021
2
May, 2022
1
February, 2023
1
January, 2018
1
October, 2019
Available data
100
tsv
24
bam
17
tagAlign
16
bigWig
15
bed narrowPeak
13
bed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
2
fastq
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
170
Homo sapiens
Biosample type
162
tissue
6
primary cell
2
cell line
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
170
AMP
Genome assembly (visualization)
GRCh38
263
hg19
Lab
170
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
170 results
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single cell RNA-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
total RNA-seq
WGBS
ATAC-seq
snATAC-seq
tissue
heart left ventricle
18
7
1
1
1
2
skeletal muscle tissue
1
22
4
1
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 15 more…
primary cell
cardiac fibroblast
2
1
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
cell line
smooth muscle cell of the coronary artery
2
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