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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
Hi-C
6
total RNA-seq
5
ATAC-seq
5
RRBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA accessibility
5
DNA methylation
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
8
February, 2023
5
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bed narrowPeak
68
bigWig
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
47
Homo sapiens
Biosample type
46
tissue
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
24
hg19
Lab
47
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
RRBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
skeletal muscle cell
1
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