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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
41
ATAC-seq
37
DNase-seq
29
total RNA-seq
6
Hi-C
6
RRBS
5
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
79
DNA accessibility
44
DNA binding
32
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
39
February, 2023
26
August, 2017
21
October, 2019
11
July, 2019
8
February, 2021
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
101
bed narrowPeak
74
bigWig
72
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
14
tsv
5
bed bedMethyl
5
bigBed bedMethyl
5
txt
4
bed bed3
2
bedpe bed3+
2
fastq
2
hic
Organism
173
Homo sapiens
Biosample type
154
tissue
19
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
173
AMP
Genome assembly (visualization)
119
hg19
67
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
15
3
3
muscle of arm
17
+ See 18 more…
primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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