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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
52
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
50
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
75
bigWig
69
bed narrowPeak
63
bed broadPeak
62
bam
56
bigBed narrowPeak
51
bed bed3+
50
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
100
Homo sapiens
Biosample type
100
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
79
hg19
60
GRCh38
Lab
100
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
100 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
4
1
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