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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
13
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
13
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
14
August, 2017
7
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
45
bigWig
40
bam
39
bed narrowPeak
37
bed broadPeak
34
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
7
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
66
Homo sapiens
Biosample type
66
tissue
primary cell
Organ
736
liver
605
connective tissue
549
pancreas
469
adipose tissue
308
kidney
303
heart
195
brain
163
blood vessel
163
vasculature
158
bone element
125
artery
105
epithelium
88
limb
66
musculature of body
61
blood
61
bodily fluid
56
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
49
hg19
38
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
broad histone mark
biosample_type!
primary cell
BIOSAMPLE
ASSAY
66 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
3
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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