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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
79
DNA binding
44
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
51
transcription factor
34
histone
34
histone modification
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
39
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
14
August, 2017
10
July, 2019
8
January, 2021
5
March, 2020
3
May, 2019
2
February, 2020
2
January, 2018
2
May, 2022
Available data
109
bam
107
bigWig
98
bed narrowPeak
93
bigBed narrowPeak
62
fastq
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
145
Homo sapiens
Biosample type
66
tissue
61
cell line
18
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
8
T1D
Genome assembly (visualization)
112
hg19
99
GRCh38
Lab
137
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
1
audit script error
1
inconsistent control
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
145 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
10
1
1
4
1
1
1
muscle of arm
17
muscle of leg
3
13
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
2
1
1
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