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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
25
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
25
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
control
Date released
32
June, 2019
23
August, 2017
7
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
43
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
13
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
78
Homo sapiens
Biosample type
78
tissue
primary cell
Organ
670
liver
613
connective tissue
559
pancreas
465
adipose tissue
322
heart
309
kidney
240
brain
181
blood vessel
181
vasculature
158
bone element
130
artery
109
epithelium
105
limb
78
musculature of body
56
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
61
hg19
42
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
78 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
13
6
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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