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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
20
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
20
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
control
Date released
41
June, 2019
10
August, 2017
10
July, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
77
Homo sapiens
Biosample type
65
tissue
12
primary cell
Organ
877
pancreas
630
connective tissue
625
liver
489
epithelium
460
adipose tissue
342
kidney
329
heart
210
vasculature
205
blood vessel
159
bone element
156
brain
128
artery
105
limb
77
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
60
hg19
53
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
target.investigated_as!
control
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
6
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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